Scientific / Statistical Programmer
(High Throughput Sequencing)
European Bioinformatics Institute (EBI)
We are looking for an experienced scientific programmer to produce software for analysing high throughput sequencing data; specifically producing nucleotide sequences (‘base calls’) from the raw output of sequencing machines. The programmer will be responsible for producing a robust, production ready implementation of previously developed algorithms.
The scientific programmer will have sole responsibility to produce, test, document, maintain, distribute and support code implementing a novel statistical method called “AYB” – (see ) which has been developed at the EBI. The post holder will combine these duties with further development of the AYB methodology and will have the option of contributing to other relevant projects dependent on time and experience.
The scientific programmer will report to the AYB project leaders and collaborate with scientists and bioinformaticians at EBI and other research institutes. Some travel, including international, is expected in order to support users and analyse interesting failure cases.
The EBI is part of the European Molecular Biology Laboratory (EMBL) and is located on the Wellcome Trust Genome Campus near Cambridge, UK. It is a world-leading bioinformatics centre providing biological data to the scientific community, with expertise in data storage, analysis and representation.
The scientific programmer will have a first degree in a highly numerate subject such as maths, physics, computer science or engineering; a relevant post-graduate qualification would be advantageous. Formal knowledge of biology is not required but the successful candidate should have a lively interest in the life sciences.
S/he will have a minimum of 3 years experience of software engineering, including successful completion of multiple projects and have proven ability to implement complex numerical methods in robust, easy to use software suitable for non-experts. Experience of development of novel statistical models and data analysis methods would be advantage.
It is essential that the scientific programmer has experience of C/C++ programming and software engineering (build systems, version control, unit testing), on both Windows and Unix platforms and have informal experience with several distinct programming language families.
The ideal candidate will have excellent communication both written and oral and interpersonal skills with the ability to work within a small team, seeking advice from others when needed. Experience of providing user support would be highly desirable.An initial contract of 2 years will be offered to the successful candidate. This can be renewed, depending on circumstances at the time of review.
For further information please visit and .
EMBL is an inclusive, equal opportunity employer offering attractive conditions and benefits appropriate to an international research organisation.
Please note that special visa requirements apply to persons from countries outside the EU coming to work at EMBL-EBI in the UK. This period of work will not count as qualifying time in the Highly Skilled Migrant Programme.
To apply, please email a cover letter, CV (in English) and contact information of three professional references quoting ref. no. AC/09/058/EBI in the subject line, to: applications@ebi.ac.uk.
No agencies.
Popularity: 1% []
Tags: applications@ebi.ac.uk, Bioinformatics, build systems, C++, Cambridge, Commission of European Communities, developed algorithms, EB-eye EBI's Search Engine, England, equal opportunity employer, European Bioinformatics Institute, European Molecular Biology Laboratory, experienced scientific programmer, http://www.ebi.ac.uk, http://www.ebi.ac.uk/goldman/AYB, http://www.embl.org, Microsoft Windows, previously developed algorithms, Programmer, Science and technology in Europe, scientific programmer, Software engineering, Statistical Programmer, Technology_Internet, United Kingdom, Unix, Wellcome Trust Genome Campus
